rs33417288 SNP Detail

Summary

• ID
  rs33417288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101012147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCACA GGCTGCAAAG
  TGCTGGCCGA CTCCAGCTTT AAACAAGAAC AAGGAAGAGC CGTTTCCAAC ATCTTCTTGG
  CTCATGATCG CTTTTAGAGT CTGAGAAGTA ACCTATCCGG CAGCAAAGTG CTTCTATGTC
  ATTTAGATTC CATGGCAGCA CGCCTTCTGC AATGAACCTT GAACCTGTGA GCACGACTTC
  R
  CTCTTTAATG TTCTCAGCCA GATTCACCCA AAACAGAACA GCATCCGAAG CGCGGTCCCT
  CGGTCCCCTG AAACATTCCA GGTGATGCTA ACGCTTCCAC GTTCCAGCTG CTCGCAGAGG
  TGTAAAACAG GCTGCAGGTA GAGCCTTGGA ATGCTTAAAC TTGAGTCATG CCACGTAGCG
  ACTCCGTCAC CCAGCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss46811426	NES10723606	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs33417288					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811426	NES10723606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101012147 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	586 bp proximal
Tssr34770	transcription start site region 34770	1520 bp downstream