rs33412257 SNP Detail

Summary

• ID
  rs33412257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100977999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTCACA ATTATGCAAG
  GGCCTCTGCA TACTCTAAGC CACGGTCATG CCTGCATACA GTTCTGGGTT TGGATGCATG
  GGTTTTACGC TATCTATATG TTGGGGCAGG CCTAGTCTGT GTAAAGCACA CAGAAGCTCT
  GGGGCTCCAT GCATGCACTG GAGATGTGCA CTCATGTCTT TCACAATGGC ACCGGCACTC
  Y
  GCAGGAAAAC GAGTGGCAGG ACCCTTAGGA TAATCAGGGA GTCTTTCCCA CAGTTTAGCC
  TCTTTATTTC CCCTCAGTCT CTGGAGAACA CGTCACCAAC AAATCCCTTC AGTTACAAAG
  CCCGTTCCCT CCCAGAGCTT GCCCCTGATG TCTGACAGTG CCTGTACTTC CCCCAGGGTA
  TGTGGGATCA ATACACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46810925	NES10725731	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss320850815	CHEV_3_100874606	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33412257					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810925	NES10725731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100977999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581951	regulatory region 581951			1245 bp distal
Rr581952	regulatory region 581952			within coordinates