rs33411063 SNP Detail

Summary

• ID
  rs33411063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100932230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTTTGG AGGCACCATT
  CATCTTTTCC TTCCAGGGCA GGCTATATTG TTATTTGTAG TGTGGACAGC TTGGCCATGC
  ATCCTCAACA CTTCTCATCA CTTCCCAGTG AAATAAGTGC TCATTAGAAA GTTTCTATTG
  TGGAAACGAG CACTTCATTC TTCCCTGCTT TATTTGCCAA GTCAATAAAT ATTTATTCAG
  S
  CACTTACAGT CTTTCTGGTA CTTGAGAGAT TAAGACATAA AGATGAGTTT AGAATCATCT
  CTGTCCTTGA GCCTTATTAA GCTCGACAGT TAGAATGGCA ATCATCTCTA TGAGAAAGAT
  ACAAACGAAA GCCCCTGAAG GAATCTGGAG AGATCAGAGA GCTCATAGCT TGTGGGTACA
  AACAGGTGAG GCTTGTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810208	NES10727215	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33411063					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810208	NES10727215	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100932230 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581943	regulatory region 581943	1532 bp distal
Rr581944	regulatory region 581944	1763 bp proximal