rs33409641 SNP Detail

Summary

• ID
  rs33409641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100939336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTTTGG AGTAGATCCT
  TGCAGATCCA GTGTGACTCC AGTAGGTAAG ACAGCATCGG AAGGGAGATT CCAGTAAGTA
  GTAAAATCCC AAAGACAGGC AGGGGCATGC TGGCTGTGTG GGAGAGCACG AATGGGCAGG
  CCACTTACGG CTTAGATTTC AAACTCATCC TCCAAGTCTG TAATTATAGT ATTAGCACAA
  R
  TTAAAATGCA GAAATCTGTT CGCTATTTTG GCTAGAGCTG TCATAAGGCC ACCTTCTGGT
  ATTAATATTT TAGACAAGTA CACTGTATCA TCTAGTTGCT ACTGTGTAAC AAACAGCCAT
  AAGACTTGGT GGCTTCAGTG GCAAAATATT TGTTTTACCG ATGGGTTATC TGGGTGGCTC
  CACTAATGTG TCAGGTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810379	NES10727290	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33409641					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810379	NES10727290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100939336 () rs orientation: forward

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	within coordinates
Rr581946	regulatory region 581946	260 bp distal