rs33409289 SNP Detail

Summary

• ID
  rs33409289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100935110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTCCAT GCAAAACTGG
  AACTTAATGT GGGTCAAAGA CTAGAAAGAA CAAATACAGA ATCCAAGTCA GGCAACCATG
  GAAGTGGGTG GGGAAAAGCG ACCATCTTCT CCTTTTTGAA TTTTTGACTG TTATGATGCT
  TCCTCTAGAC CTTTGAACCT GCTTATCAAA AACAAATGGA CAACTGAAAA CTAGTAATGT
  R
  ATAATAATAA TAATTGGAAC AAGAATGTAC AATTTTCTAT ATCCTTGTGC AATATAAATG
  CAGTTCACTC CCATACAAAG CAAATGCACA GTGCCCACAT ATGATGCATG CACACTCAGT
  CAGATGACTC AGCAGGATCA CAGACTCAGC AATCCATGAG GGCTCCACCA AGGTGCTGTC
  CATCAATGCT TCACCTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46810280	NES10727250	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33409289					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810280	NES10727250	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100935110 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581944	regulatory region 581944	669 bp distal
Rr581945	regulatory region 581945	1752 bp proximal
Tssr34767	transcription start site region 34767	1730 bp downstream
Tssr34768	transcription start site region 34768	1749 bp downstream