rs33409270 SNP Detail

Summary

• ID
  rs33409270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100930020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTAAGA GTACTGATTG
  CTCTTCCAGA GGACCTGGGT TCAGTTCTCA GTACCCACAG CTCAAAACTA TCCATACCTC
  TAGTCCTAGG AATCCCAGTG CCCTCACACA GATATATGTA AAGGCAAAAA CACCAATGCA
  TATAAAATAA AAAATATTAA AATAGGCAAG AGTACATTGT ATCATTTAGC TGATGCATAA
  R
  GGTTAAAATC ATCTTTAAAA ATAAGTCAGG GAGTGGTTAT CATGGGAGTC AGGAGGGTGA
  TCTGTGGGGA GGGATTATGT CCCGATGATG CTCAGGCAGG ATGGGTGGGC ACGTCTAGGG
  ACCTGATCGT GTTGTTTCTT GAACGTTGTA GTGATGACAC AGGTTTTAGC TTCTGCTTAC
  TCATCAAACT GCATACTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810181	NES10727443	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33409270					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810181	NES10727443	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100930020 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581943	regulatory region 581943	324 bp proximal