rs33408945 SNP Detail

Summary

• ID
  rs33408945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTGGGA CGCAATGCCG
  CACGAGGGGC CGCTGAGGCA TCTCTCGCGG GCAAGGAGGG CGCGTGGTCT CGGCTTGGAG
  CCGAGGTCCC GCTTCGTGGT GCCGGTAGTG CGTCCAGCCG GGAAGCGTCG CGGCGACCCA
  GACGGCCCGG GAGAAGTAGC CGCGCGGTAG CGGCGGGCGG GTAGACTTAA CTCTTCGCTG
  R
  CGCGGGTTCA TTGCGGAGGT TTGAGTATTA AAATCACACG CGCCCAGACT TTGCTTGTAC
  CCATTCAAGT CAGTTTGGCC ATAGTGGTCA ATTTCCTTTC CGGATGTCCC TGGCGGCCCG
  GTTCCTTTTG CGACCGTCCT GTGGATATTG AGGAACACCG TATCTACAGG AGACAAGAAA
  CCCCGTAACC CCCCTAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45274570	mCV22674659	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss147552382	ENSMUSSNP1129796	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33408945					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			513 bp upstream
Gm75596	predicted gene, 75596			1209 bp downstream
Rr397296	regulatory region 397296			657 bp upstream
Rr564651	regulatory region 564651			616 bp distal
Rr564652	regulatory region 564652			449 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1337 bp proximal
Rr564655	regulatory region 564655			1346 bp proximal
Tssr20042	transcription start site region 20042			620 bp downstream
Tssr20043	transcription start site region 20043			882 bp upstream
Tssr20044	transcription start site region 20044			911 bp upstream
Tssr20045	transcription start site region 20045			1435 bp upstream
Tssr20046	transcription start site region 20046			1449 bp upstream
Tssr26150	transcription start site region 26150			724 bp downstream
Tssr26151	transcription start site region 26151			1348 bp downstream