rs33408435 SNP Detail

Summary

• ID
  rs33408435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100929052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTCAGC ATTCCCTCCC
  CCCCCGAAAC TATAAGAGTG TTCATTACGA TTAGTACTGA AAGTGGGCTC GCTTTGTGGT
  TCCAAAAGAG CAGAAGCCAG AGGTAATGAT GTCACAGAGA TGAACAAGAT CTTCTCTGAG
  GGTCCAGGAA CCCTGGAAGG GCAAGACGGG GTTAAAGGAC ACCAGAAGAT CCATTGAGAG
  Y
  TGTGGGCAGC ATGAAGCAGT TGACAGATAG AATCCTTCAG AAGAGGCTCC AGAGAGCCAG
  AGCAAGGGCA ACGGGTTCAG GAGACTCCTG TGGGGAGCAA GGGAAAAGAC ATGCAGAGCT
  CATGAGAGGA AATAGAAAGA GGCAGGAAGG AGGCTTCCCT CCCCCACAAG AGGGTAAAGT
  GATTAATTGA TAAAAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46810166	NES10727434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33408435					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810166	NES10727434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100929052 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581943	regulatory region 581943	1292 bp proximal