rs33407836 SNP Detail

Summary

• ID
  rs33407836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100907417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACTCTA GTTACCATGG
  TTACACAGCT GTTTTTTTTT TTAAGCCCTG AGGCATCTCC CATTCTTATC TTAAGCAGCC
  TATTGTACTT TTCCCTCTCT TGAGTTTCTC TCACCTCCTG ATACCCACTG ATACCTGATA
  CCCACTGATG CCTGGCACTT TACCTCGGGG GTCCTCCCCT GAGCATCATT ACTGGCCATA
  Y
  ATTGATATCT CCTAGTGTAC AAGTTAGGTG TGGGTCACCC TTGGAATTCC CACTATTTCC
  CAGATAAACG CTTCTTAGAA ACTCTTTTTG AGTTGCGGTC CAGCTCAACT TGCACATATC
  AGAAAAATCT CCCGCTCTAA GCCTGGGTTT GGTTTTGCTT GGTAAACGGT CTCGTGATCC
  ACCCAAGCCC CAATACTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46809821	NES10727820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33407836					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809821	NES10727820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100907417 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	658 bp distal
Rr581940	regulatory region 581940	889 bp distal