rs33407398 SNP Detail

Summary

• ID
  rs33407398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CCCGTGCTTC CTGGGGACTG
  Y
  GATGGCGACC CCAATGGGTC AGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46272434	mCV24193636	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145392344	ENSMUSSNP5993513	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322751404	CHEV_8_87228134	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33407398					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Coding-Synonymous
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			282 bp upstream
Rr666586	regulatory region 666586			751 bp distal
Rr666587	regulatory region 666587			377 bp distal
Rr666588	regulatory region 666588			351 bp proximal
Tssr78439	transcription start site region 78439			820 bp downstream
Tssr82117	transcription start site region 82117			891 bp downstream
Tssr82118	transcription start site region 82118			927 bp downstream
Tssr82119	transcription start site region 82119			955 bp downstream
Tssr82120	transcription start site region 82120			1032 bp downstream
Tssr82121	transcription start site region 82121			1579 bp downstream
Tssr82122	transcription start site region 82122			1814 bp downstream
Tssr82123	transcription start site region 82123			1963 bp downstream
Tssr82124	transcription start site region 82124			1992 bp downstream