rs33407105 SNP Detail

Summary

• ID
  rs33407105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162357187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA AACAGAAAGA CTCCAAAATT
  M
  AGGGGAATGT ATTATTGGAA GCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45273960	mCV23583847	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss148190297	ENSMUSSNP4071123	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33407105					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162357187 () rs orientation: forward

Symbol	Name	Function Class
Ptprt	protein tyrosine phosphatase receptor type T	Intron
Rr569207	regulatory region 569207	1854 bp proximal