rs33406342 SNP Detail

Summary

• ID
  rs33406342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100904002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAACTCA CTCTTATGAA
  CATTGGAGAA GTTATTCATC TCCCCCAGCC TCTATTTCCT TATCAACTAA ACAGGGATAA
  TAACTTATGG AGCTGCGATG AGATAATATG AAATATAACA TTTAATACAA TACCTGGACC
  ATTTGTTGAG TGAGTAAGCA ATAGACATGA GCTAGAAATG TTCCTGGGAC AAGTGAGAAA
  Y
  GCCCAGGCAA CCTTCTCCCT AGGTTACTGA TTCCCCACAG AGACCTCAGC TCTGTAGTTT
  GGATCTGGAA TGTCCTGCAA AAGAGCCAGG TAGTAAAGAT GTGGCCTTGG CTTGGCACTA
  CTGGAAAGTT GATGGGACCT TTAAGAGGTG GAGCTCAACG GGAGGTCATA GGTCACTGGG
  AGCACAGCCT TAAAGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46809716	NES10728088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33406342					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809716	NES10728088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100904002 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	1097 bp proximal