rs33405916 SNP Detail

Summary

• ID
  rs33405916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100906631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCTACC AACATGCAGA
  GCTGGCAGTC AGCAGGAGTC AACTGAGTCA ACGCCAGCAA ACATCTGTGC CTGTCTTGGG
  TGCCCCCTAG TGGTGATCTG TATGGTACAG GTAGCTGCAG GGTGATGACG GAGAACCACA
  AGGGCTCAGA TGCAGACCAG GAAGGATATT AGGAGGAGAT GCTGGGCCGC TGTCAGGACT
  K
  CATCTCCATC CAACCCTGCT GCCTCTTCCT CTGTGTACTG TAAACATGCC CCCGAGCCTA
  CCGACTTGAA CCTCAAGCAG GACAAATAAT TAAACCTCAT GTATCAATGT TCCCTGCCAT
  TTCTTCTGGT TTTCTCTCCT GACCTTTACA GCTCTTGAGA AATTACCTTA CACCTAGCCT
  GTCAGCTTCC TCACTCTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46809800	NES10728134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33405916					SNP	G	G	G	G	G	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809800	NES10728134	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100906631 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	within coordinates
Rr581940	regulatory region 581940	103 bp distal