rs33402613 SNP Detail

Summary

• ID
  rs33402613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100908721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTGGTT CCTCCAAAAT
  GCAGACACAA TGGAACTCAC CCTCCTCAAG TTCCTGCCAC CCCGACTTTC TTTCCATCCG
  GAACTGTATC TTTTTTCTTT TGGTTTTTCC AGACAGTGTT TTACTGTGTA GCCCTGGCTG
  TACTGGAACA TTTATCGAAA ACTTAAAATA TGCCAGTGTC TGTACTAGGT TTTTAAAAAA
  Y
  GTATTTGTAT TATGATCCTC TTTTTATGAG AAAGCCAAAC CCCATATGTG GAAACACAGT
  CTGATGACAT AGCTAATACA TGGTAGGACT GTAAGCTGAG TTTAGGCTTA TGGTCTCCAA
  TCCTTAAGGA CTTTTTGTTG CTCCAGCCTG TTTCCCTAAC CACCAGCCAG GAGCAGTGAG
  GTGGTCCAGG CCAGTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46809866	NES10727837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33402613					SNP	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809866	NES10727837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100908721 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	1962 bp distal