rs33402611 SNP Detail

Summary

• ID
  rs33402611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100908676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGATTC TAAAGAAGGA
  GAAAGTGAGC CCAGCATAAG CACCCATTGC TGGTTCCTCC AAAATGCAGA CACAATGGAA
  CTCACCCTCC TCAAGTTCCT GCCACCCCGA CTTTCTTTCC ATCCGGAACT GTATCTTTTT
  TCTTTTGGTT TTTCCAGACA GTGTTTTACT GTGTAGCCCT GGCTGTACTG GAACATTTAT
  M
  GAAAACTTAA AATATGCCAG TGTCTGTACT AGGTTTTTAA AAAATGTATT TGTATTATGA
  TCCTCTTTTT ATGAGAAAGC CAAACCCCAT ATGTGGAAAC ACAGTCTGAT GACATAGCTA
  ATACATGGTA GGACTGTAAG CTGAGTTTAG GCTTATGGTC TCCAATCCTT AAGGACTTTT
  TGTTGCTCCA GCCTGTTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46809863	NES10727836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A		C	C	A	C
ss135543649	ENSMUSSNP2623076	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33402611					SNP	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809863	NES10727836	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100908676 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	1917 bp distal