rs33402607 SNP Detail

Summary

• ID
  rs33402607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100908519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATAAGCA TATTACGTAG
  GTATGTGTGA TGGTTAGAGT CCTTAGCTTG ACTGAATCTG GTATCACCTA GGAAACAGGC
  AATTCTGTGG AGGGTTATCT TGATCATGTT AACTGAGGTG TGAAGGCTTG CCCACTGTGG
  GTGGCATCAT TCCTTAGACT CAGATTCTAA AGAAGGAGAA AGTGAGCCCA GCATAAGCAC
  Y
  CATTGCTGGT TCCTCCAAAA TGCAGACACA ATGGAACTCA CCCTCCTCAA GTTCCTGCCA
  CCCCGACTTT CTTTCCATCC GGAACTGTAT CTTTTTTCTT TTGGTTTTTC CAGACAGTGT
  TTTACTGTGT AGCCCTGGCT GTACTGGAAC ATTTATCGAA AACTTAAAAT ATGCCAGTGT
  CTGTACTAGG TTTTTAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46809857	NES10727834	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33402607					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809857	NES10727834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100908519 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	1760 bp distal
Rr581940	regulatory region 581940	1991 bp distal