rs33401146 SNP Detail

Summary

• ID
  rs33401146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100822673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCTGC TTAGATCTCT
  TGTACTTCCA CAAGTTTTAG GATTAAATGT TTTCTTTATG TGAAGAATGT CATTGGAGTT
  TTTATGAGTG TTACATTGAC TATATTGCTT TTGGTAAGGC AGCCATCTTA ACACTATCGA
  TTCTGCCAAC CTGTGAGTAT GGGAGGTCTC TCAATTAGTC TTTGCCCATA TTGACATGCC
  R
  TCCTGACAAG GAGCAAGCCA TGAAACTAAC CAGGGCAAAA GTGGACCACA CCAAAGGTCC
  AATTTAAAAC AACATTTTCA CCGGGCATGG TGGCACACGT CTTTAATCCC AGCACTTGGG
  AGGAAGAGGC AGATGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG
  GACAGCCAAG GATACACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46808918	NES10731636	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	A	A		G	A	G		A
ss135542845	ENSMUSSNP3502032	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320850228	CHEV_3_100719280	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33401146					SNP	A	A	G	G	G	A	G	G	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808918	NES10731636	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100822673 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	137 bp downstream
Rr581925	regulatory region 581925	1486 bp proximal
Rr581926	regulatory region 581926	1580 bp proximal