rs33400909 SNP Detail

Summary

• ID
  rs33400909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100904952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCAGCT GCCATACCCA
  CTACCTGCTG CCTCTGCTCT GCCATCATGG CGTCTAACCC TCTGGAATTA TAGGCCCAAA
  CAAATTAATT CTTCTATAAG TTACCCTGGT CACGGTGTTT TATCATAGCA ACAGCAAGGG
  AACTAATCTG CTGGCTTTCT TTCTAGTCGG GTGGGAGGGA ATCAGGAGGT GAGTCTGTGG
  Y
  GAGTCTCACA GATGCTGGGA TGGCATATGA TGATGGTGAC AGGGACGGGC ACACAGGATG
  CAGGAAGAAA TGTGGCACTG GGTTATTCTG CCCCCAAGAC GCTAGCCTTC AGCATGAAGG
  AACTGCCTTC CTGGGAGGAG ACAACTCCAT TTAGTGCAGT CTGCCACCAA AGGGCAGCAC
  AGGGCCCTCT GCACAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46809737	NES10728103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33400909					SNP	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809737	NES10728103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100904952 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	147 bp proximal
Rr581940	regulatory region 581940	1555 bp proximal