rs33400692 SNP Detail

Summary

• ID
  rs33400692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100870297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGGGCC ATTCCCGAGC
  AAAGCTCAGG TGCTGCTGGT GCTTCAGGAA CAGGCCTCCA AGTCTTGGAT GGTCCCTGGA
  GAGGCCCCTG AGCGAGCCCC CTCTGGGTGA CCTGTGCACT AGGGGCCTCC CCGTTCTTGA
  GGGGCTCCCT GCTGACGTGT CCCTCTTTCT GGACCTTGCT TTCTGGGTTC TGACCAGGAA
  Y
  ACTTGGCACC AAAAGCTGGG TTTCCTTTTC TCTCAGAGTC TCTGGCTTGT TCGGGACCCC
  TCGACTCTCA CTCTCTGACA TGTGAGGACC CTTGGGTATT CCTTGAAGCA CCTCTCCATG
  GCCTTGCTTG GAAGCCATTC CTTCAGCTTT CTTAGTTTTG GGCTGGAACT TTGATTTCTC
  TTGTTCTTCC CTGTCACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	SM/J
ss46809542	NES10729404	PERLEGEN	MM_PANEL2	f	SNP	C		T	C		C
ss135543283	ENSMUSSNP4504813	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320850391	CHEV_3_100766904	CHEVERUD	SCREENING_POP	f	SNP							T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	SM/J
rs33400692					SNP	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809542	NES10729404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100870297 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			1005 bp upstream
Rr581933	regulatory region 581933			1175 bp proximal
Rr581934	regulatory region 581934			1267 bp proximal
Ttf2	transcription termination factor, RNA polymerase II			Coding-NonSynonymous
				Noncoding-Transcript-Variant