rs33400555 SNP Detail

Summary

• ID
  rs33400555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142094150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGCTAG ACAACTACAA
  GGATTGTTCT AAGACCAAGT CCTCGGATAA ATGGTGTACT GTCTGCAGAT AACCTGTGCT
  CCCCATCTAC GGACTGAAAA ATCATGTCTA GATGACTGCC TGTACCTGAT CCAGAGTAGA
  CATTTTTATA TGTGGTGGTC ATGCAGTATC CCTGTTTGAT CACCACTAAC ATGGGGCTTT
  Y
  CTTGAGTTTT TAAAGGACTT CTTAAATTTC TACTTGTCTG TATATCTGTA TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCCC TCTCTTTGTG TGTTTGTGTA TGTTTGGGTG TGTGTGTGTG
  TGTGTATGTG TGTGTGTGTG TGTGTGTGTG TGCACACAGG GGACATCTTG CCCTGTTACT
  ACTCAAAAAC ATGGCCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45773761	mCV25013580	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51529092	NES14869841	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33400555					SNP	T	T	C	C	C	T	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529092	NES14869841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142094150 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	1036 bp upstream
Sdk1	sidekick cell adhesion molecule 1	Intron