rs33400130 SNP Detail

Summary

• ID
  rs33400130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100904539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGAAGCC ATAGACCAAC
  CAACCATGCC CTGAAAACTC CAAAACAATG AGACAAAAAT ATTCCTTTCT TCCTTAGAAG
  TTATCTCAGG TCTTCTGTCC CAGAGATGGG AAGCCAACAA CCACAATGGA CTTCTCATGT
  TCTTCCATGG CTAAATCTCA CCCTCCACAG GGAAAGTCAA GTGCTTTGGA GACCCTGGCT
  R
  CGGTGATTTG AGTAAGATAA CCCCATCTAT CTCAGGCGTT TGAACACTTG GTCCTCAGTT
  GTTGGTGCTG CCTGGGGAGG AGTAGGAAGT ATGGCCGTGC TGGGGGAAAT ATGTCACTGT
  GGCAGGCTTT GAGAGTTTAA GGAGCCATAC TGCCCTTCTA GTTCACTTTC TCTGCTTCGT
  GCTTGTAGTT CAGGATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46809728	NES10728097	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33400130					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46809728	NES10728097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100904539 () rs orientation: forward

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	560 bp proximal
Rr581940	regulatory region 581940	1968 bp proximal