rs33397440 SNP Detail

Summary

• ID
  rs33397440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCACAT AAAGGGAGTT
  CACAGAAGGA CATGAGCGAG TGTAAATGAA GCGTCCACAG TGTGAGACTG ACACTTTCTG
  ACTGCGTCAA CCGGAGTCTA TGTGGGGACC ATGACAGACA CTTGCCAGTC AACAGAAGTC
  AAATCCAAAG GGTGAAACGT CAAAAATAAG ACCATGAAGA CTTTTTCTAC AAGAGCAGGT
  R
  GGTAAGTTAC AGTGGGGCCG ATGCCTTGTG TAGTTTGAGT CCAGCCTTCG CCTCTATGGA
  GAGCTTGAAA ACTGACATCA TTCTAACTGT CTAACTGTCA CCTTCTCAAG GTTGGAAGCT
  GCCCATTTAT CACCAAGAGT CAGTATCGGG GAACTATTTA ATGCCTGTTG TCTCTCATAA
  TTACATCACC TCATAATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46808948	NES10731535	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	A	A		A	G		A
ss135542899	ENSMUSSNP4764605	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss320850243	CHEV_3_100720395	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33397440					SNP	A	A	G	G	G	A	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808948	NES10731535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823788 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1252 bp downstream
Rr581925	regulatory region 581925	371 bp proximal
Rr581926	regulatory region 581926	465 bp proximal