CCTTATATTA TTCATTTTAG TCAATTATAT ATTTTTTAAT GTGGAAGATA TGTGCAACTA ATATAATCAA AACACATTTA TCCATGTTGT TAAAAGAAAA TATATAATCT TCCAGATACC TTTTAAAAAT ATTTATTCTC GAGAAAGATG AATAGTGAGC TCCTGTGTGA TGACCACATA AAGGGAGTTC ACAGAAGGAC R TGAGCGAGTG TAAATGAAGC GTCCACAGTG TGAGACTGAC ACTTTCTGAC TGCGTCAACC GGAGTCTATG TGGGGACCAT GACAGACACT TGCCAGTCAA CAGAAGTCAA ATCCAAAGGG TGAAACGTCA AAAATAAGAC CATGAAGACT TTTTCTACAA GAGCAGGTAG GTAAGTTACA GTGGGGCCGA TGCCTTGTGT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46808936 | NES10731527 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | A | G | A | A | A | A | A | A | A | A | |||
ss135542884 | ENSMUSSNP4780666 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | A | |||||||||||||
ss320850237 | CHEV_3_100720226 | CHEVERUD | SCREENING_POP | f | SNP | G | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs33396498 | SNP | A | A | G | G | A | G | A | A | A | G | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46808936 | NES10731527 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:100823619 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm40108 | predicted gene, 40108 | 1083 bp downstream | ||||||
Rr581925 | regulatory region 581925 | 540 bp proximal | ||||||
Rr581926 | regulatory region 581926 | 634 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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