rs33395579 SNP Detail

Summary

• ID
  rs33395579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGTGAG TTCCAGGACA
  GCCAAGGATA CACAGAGAAA CCCTGTCTCG AAAAACAAAA ACAAAAACAA AAACAAAACA
  AAAAACAAAC AAAAAAACCA ACCAAACAAA CAAACAACCC CAACATTTTC CAAATTAACC
  TCAGAAAGTG TCGAGTTTAC TAAAGTCAAG TACTAAAGGA ATCCTGACAG GGAAAACAGC
  K
  TGTTAGGTTA AAAAGCAGTG TTTACTGGGA GCACAAAGTA TGCTTTGTGA CCAATTCTTT
  TTTTTTGTTT TGTTTTTGTT TTTTTAAGAT TTATTTATTT ATTATATGTA AGTACATTGT
  AGCTGTTTTC AGACACTCCA GAAGAGGGCA TCAGATTTCA CTAGGGATGG TTGTGAGCCA
  CCATGTGGTT GCTGGGATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46808927	NES10731584	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G	G	T	T		G	T	G	G
ss320850232	CHEV_3_100719645	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33395579					SNP	T	G	G	T	G	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808927	NES10731584	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823038 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	502 bp downstream
Rr581925	regulatory region 581925	1121 bp proximal
Rr581926	regulatory region 581926	1215 bp proximal