rs33394644 SNP Detail

Summary

• ID
  rs33394644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66088036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC TTTTACCTTG TCTTACTGTA
  W
  TTTGGTCCTG TTTGGCTGTC ATCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45272481	mCV27577142	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T	T
ss146716554	ENSMUSSNP3856513	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320323726	CHEV_2_66095749	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33394644					SNP	A	T	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66088036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	818 bp distal
Rr397014	regulatory region 397014	902 bp downstream
Rr558173	regulatory region 558173	1111 bp distal
Rr558174	regulatory region 558174	1276 bp distal
Rr558175	regulatory region 558175	585 bp distal
Rr558176	regulatory region 558176	616 bp distal
Tssr24377	transcription start site region 24377	1047 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	1075 bp upstream