rs33394140 SNP Detail

Summary

• ID
  rs33394140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100765117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTTCCA TCTGCTACTC
  CCTTCTCAGC ATTCCTTTCA CAGTCCCAGA CAAAAGACAC CTGCCAAGCA AGATGAAGGT
  TGTTCTCAAC CTGTACATAA CTGTGTATCC TTTCAAATGG TTATAACTGT GCAGAGCACA
  CGGCTGGCAA GTGTTTACAG AACACTAGGC TTACAGACAG TAGCTAAGGC TAAAGGTGAT
  R
  GTGTCTTCTA CCAACGTCTA ATCTTGCTCT CATTTCCCAA GGAAGAGTGC TCAGGGACTT
  ATTCCACATT AGACCTCTGC TTGCTTCCTG CATCACACAG TTGTGGGGCC TGAATGAGGT
  ATCAGTTGTC ACTGTTATAA TAGGAACAGG AGTGTGAAGT ATGTACAGAA TACAGAACGG
  TGGCAAAGAC AAGGTCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46808093	NES10733822	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33394140					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808093	NES10733822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100765117 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	1085 bp distal
Rr581918	regulatory region 581918	635 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron