rs33393265 SNP Detail

Summary

• ID
  rs33393265
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100764723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTTAG GAGGCTGTTT
  GGTTCTGACG GCATACTTTG CTTATGGGCT AGCTGGCCTT CCCAACAGTA CTGGTCCTTC
  TTCAAGGGAG GGTCATAAAA TATCTGAACT GTTTGTTTTT AAGCACAATG GAGTCAGTTA
  TACTGCTGAA GGGATCTTCT GGAATGCCCC ACCCCTTCCC CTGCATTGAG AACAGGAAAT
  W
  CAGGAAGGAC TAGAGCTTGC GTTGCCTTTC GTCTGTCTCT GGTTATGTGG TAGAAACTAC
  CAGGACAATG ACATGTGTGC TTCATGACAA TCAGGGGGCA GTTGCAAATA GAACTGGCCT
  ACCAAAGAAA AGGACAGGTC TACTGCCAAC TCAAATATTG TCTAGGGATA GGTATCTGCT
  TATTACTATT CTGGAATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46808078	NES10733812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33393265					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808078	NES10733812	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100764723 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	691 bp distal
Rr581918	regulatory region 581918	1029 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron