rs33392658 SNP Detail

Summary

• ID
  rs33392658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75512969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAATTT ACTTTATGTA
  TATGAGTACA CCATTGTTCT CTTCAGACAC ACCAGAAGGT GGCATCAGAC CCCGTTACAG
  ATGGTTGTGA ACCACCTTGT GGTTGCTGGG AATTGAACAC AGGACCTCTG GAAGAGCAGG
  CAGTGCTCTT AACTGCTAAG CCACCTCTCC AGCCCCCTTT TTTCCCTCTT TTTTTTTTTT
  K
  TTTTTTTAAA AATTCATGTC ATGTATGAGT ACACTGTAGT TGTCTTCAGA CACACCAGAA
  GAAGGCATCA GATCCCATTG TAGATGGTTG TGAGCCACCA TGTTGCTGGG AATTGAACTC
  AGGACCTCTG GAAGAGCAGC CAGTGCTCTT AACCTCTGAG CCATCTCTCC AGCCCCCCTT
  TTCCCACCTC TTAAGACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45272763	mCV25010618	ABI	CRAMUS_MOUSE	f	SNP	T		T	G
ss146768200	ENSMUSSNP5605374	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33392658					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75512969 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559542	regulatory region 559542	766 bp distal
Rr559543	regulatory region 559543	420 bp distal
Rr559544	regulatory region 559544	132 bp distal
Rr559545	regulatory region 559545	51 bp proximal
Rr559546	regulatory region 559546	137 bp proximal
Tssr18460	transcription start site region 18460	574 bp upstream