rs33392544 SNP Detail

Summary

• ID
  rs33392544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100729483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTCAGG TCCTTGCCCT
  TACACAGTGA ACACTTTACT CACTGAACCA TCTCACCAAG CCACTAAATT ATTTTAATAA
  GTTTAATAAT TTAAGTAATA AAATAAATTT AATAATCAAT TGGAAACTAG TGGGAGCCTA
  GTCATATTGG AGAGTAAAAC GTATAAAGGA GCGTGTAAAG GAATTGGATG TATAAAGGAA
  Y
  GCTGCCATTT GAATTATCTC TCTCCAAGAC CCTTGAGCTT GACCCTTAAA GAACCTCAGA
  ATGTCAGCAC TCAGAAGACA GAGCCAGCAA AGAAGCCATG AGACTCAAGT GAGGCCTTCA
  GGCCAGGCCT TAGTTAAATA TGGCCGCTGT CCTGGTAGGA GGATGAGACG AGGAAGCAGC
  TGTGTAGAGA AAGATTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46807718	NES10720211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	C	C		T
ss320849646	CHEV_3_100626090	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33392544					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46807718	NES10720211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100729483 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	within coordinates
Rr581910	regulatory region 581910	1980 bp distal
Rr581912	regulatory region 581912	501 bp distal
Rr581913	regulatory region 581913	626 bp distal
Rr581914	regulatory region 581914	490 bp distal