rs33389470 SNP Detail

Summary

• ID
  rs33389470
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:85990927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCTTCAG CTTTCAACTG GCACGTGCCA TAGGTAGATT
  TATCAAAATA TGGGACCCTG TGGGATTTGT AAAAATATAG AGTTTTTTTT TTTCTTTTTT
  M
  TTTTTTCTTT GTGCTAGTTG AACAATCAAA CCCATGTTAG GAGATATTTT CCCGAGTCCA
  GTCATCTCAG GAACAAGTTC TACCTTTCTG ACTGCATCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45272425	mCV25235533	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss146849940	ENSMUSSNP3699587	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320376645	CHEV_2_86000740	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33389470					SNP	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85990927 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Or5al1	olfactory receptor family 5 subfamily AL member 1			Intron
				mRNA-UTR
Or5al7	olfactory receptor family 5 subfamily AL member 7			1420 bp downstream