rs33385002 SNP Detail

Summary

• ID
  rs33385002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109504140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCGGGT ATCTCCATAA
  CAACTGGTTT ACATTACATT CATTCTCGGC TCCTCTGCTT CGCTGCGTAA GCTAAGCTGA
  GGGTAGGCAA AGGAAGACTC TAGTGAAGAG ATACCTGGAG CTAGCGCCTC CCTATGTTGG
  GGGATATGGT TAACTCTGGA CTTACAGCTC ATTTCTAGAG ATTTCCGGAC ATCTGCCTAG
  S
  ATCTCAGCCT AAGGGCCTTG CCCTTCCCCC ACTGCACCCC TCCCCCACCG CATCCGCCTT
  TCAAGAGATT ATTTTTACAC GCCCGCGCAC ACGCGCACAC ACATACGGGG GGAGGAGGTT
  TATTTTATTG TGACTCTTCT TGAAGTTCAT CTCTTTCCTT CCAACTTACT TTCCTCCAAC
  ACGTGACCTC TCCACTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45272075	mCV23782084	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss147203220	ENSMUSSNP249880	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33385002					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109504140 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	905 bp upstream
Cpgi12032	CpG island 12032	215 bp proximal
Gm20638	predicted gene 20638	within coordinates
Gm45346	predicted gene 45346	within coordinates
Rr562477	regulatory region 562477	415 bp proximal
Rr562478	regulatory region 562478	916 bp proximal
Rr562479	regulatory region 562479	1209 bp proximal
Rr562480	regulatory region 562480	1612 bp proximal