rs33383279 SNP Detail

Summary

• ID
  rs33383279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100680797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAGAAA GGACATTCTG
  AAGGTGCATT GCCCCAGGGC GTCTGCCCTG CAAGGTGGTT AACACTGGGA ATGGTTTGGA
  CTGACAATAC GTTGACACAG AACAAAGCAG TGAGTCCAAG TAGTGATGAC TGTGACTATT
  TCCAGCTGCC CCTGCAGTGC GGTGCTATTG GCAGCTGTTT CCAGCCGGCC AGGGTGACCC
  R
  TATTTGTCAC TGACTGGGAG AGGAACTAAA GGACTTGGTG TCTTTGGAGA AGCATGAGAA
  AAAGTTGTAC ACAGATGAGA AAAATCTCTC CAAAAGTATC AAGAGAGCTA GAATGGAAAA
  GTATTAAACC AAAATGTGAT GCTCACCACA GGAAATCGCC CAACCTAACT GAGAGTTTCA
  AAAGACAGGA AGGGATTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46807028	NES10722753	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33383279					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46807028	NES10722753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100680797 () rs orientation: forward

Symbol	Name	Function Class
Rr581903	regulatory region 581903	1804 bp distal
Rr581904	regulatory region 581904	within coordinates