rs33381664 SNP Detail

Summary

• ID
  rs33381664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100675453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTACTTT TTTTTTGGGG
  GGGGGGGGAG TACGTGTGTA ACTTTTTTTA CTTCATGGTT TTACAAGTGA TACATCTGGG
  ACCAACTGTG TTAATAATTT CCCTACAGTC TGAATGGTAA ATAGATGTCA CGATGGTCCT
  GCTGTGAACG TACAATGATG CCATGTTTAC TTATCCCCCT TCTTGGTGTC ACTTACTGAC
  Y
  GAAAAGTGAT CGTTAGGGTG AGATATTAGT ATTAATTCCC ACCCCAGTGT TGTCAACAGC
  TATAAAAGAT TCCTTCCAGT TGACCAGAAG AGGGAAGCAG AGGACCTAAG ATGGCACATG
  AAATCCCTAA AGTGAGTTTG GAATAAACAC AGAAACACTG AGTCTGGAGG CTTCTCTTGG
  ATTGTCCTTT GACAGAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46806878	NES10722968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33381664					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806878	NES10722968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100675453 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	within coordinates
Rr581902	regulatory region 581902	80 bp proximal