rs33380021 SNP Detail

Summary

• ID
  rs33380021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100675046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCATA AAGTTATTTT
  TGTTGCTACT TCATAGCTGT AATTTTGTGA CTGTTATAGA TTGTAATGTA AATGTCTGAT
  ATTTGACCCC AAGGGGCTCT CGACCCACAC ACAGGTTTAG AAACACTGCT TTAAGGCCTT
  TGAAATCCTT TTCAACTCGA AACTATTTGA TTAAGATTAA GTCTATTATC AACTGAAAAG
  R
  CATTCATTCC TCAGGCTGCC ATAGTGGTTT CTAATGCGAT CTTTCTTCTT GAGTTCACCC
  CTCAGAGTCT ACAGTCACAT GGCTCCCTGG AGTGTTTTGC AGAGTGACAT CTTAGCCCTT
  AGGATACTAC TTCAAAAAAA AAAAAATCAT TGATCTAGAA CTACAGAATC TATCTCCCTA
  GGAATTCACA GTGCTATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806863	NES10722963	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33380021					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806863	NES10722963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100675046 () rs orientation: forward

Symbol	Name	Function Class
Rr581900	regulatory region 581900	1954 bp distal
Rr581901	regulatory region 581901	360 bp proximal
Rr581902	regulatory region 581902	487 bp proximal