rs33377920 SNP Detail

Summary

• ID
  rs33377920
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164717588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTGGAGAG TTTTAACATT TTTTGGTGAG GATCTTTTAC CTGCAAGTAT GTATGTACGT
  GCACCATGTA TACCTAATGC TGGGATTGAA GGCATATGCT ACAACAGCAG CTCTAAGGTT
  CTAAAAGCTG CTTTTAGGAG TTGGTCCATC TCACTGATCA TGAGACAGGG TCTCATTTAG
  ACCAAAATGC TCTTGAAACT GCTATGGGGC ATAGACTGGC CTTGAACTCC TGATCCTCCT
  TCCTGTGTGC TGGGTTCACA GGCCTGGTCT TTACCATAAA ACCAAATTGA CTTTTTTTTT
  W
  AATTTATTTT ATGTATATGA GTACACTGTA GCTGTACAGA TGGTTGTAAG TCTTTATGTG
  GTTGTTGGAA ATTGAATTTT TAGGATCTCT GCTTGCTCTG GTCAACTCTG CTCACTCAAG
  CCCAGATTTA TTTATTATTA TACATAAGTA CACTGTAGCT GTCTTCAGAC TCACCAGAAG
  AGGGCGTCAG ATCTCATTAT GGGTGGTTGT GAGCCACCAT GTAGTTGCTG GGATTTGAAC
  TCAGGACCTC TGGAAGAGTA GTCAGTGCTC TTACCCGCTG AGCCATCTCC ACAGCCCCCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45271421	mCV23132268	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33377920					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164717588 () rs orientation: forward

Symbol	Name	Function Class
Gm75526	predicted gene, 75526	1193 bp upstream
Rr569745	regulatory region 569745	1204 bp distal
Rr569746	regulatory region 569746	703 bp distal
Rr569747	regulatory region 569747	170 bp proximal