rs33375169 SNP Detail

Summary

• ID
  rs33375169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116121865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCCTTCT TCAGGGGCAA
  GGGTATAACA TCCATGGCTG CCATTTTGGC ATAAAAATAC CTCTTCCTGC ATTAGAAATC
  TCTCATGGAG GCACGGACTT CATTTCCAGT AGAACAAGCA CCAGCGAACG ATGGTTTCGC
  ACAAGCAGCC AGGCAGAAAT CTGTGTTCCT GTAGTTGGCT CTGGAGAAGT TTTCAAGCTG
  S
  CTATCTCATG AACACCTTGG AGCAGACTGG TCACATGACC CAAATCCCAA AAGTCGTTGG
  ATGGAGGTCT GTGGAGAGAC TCTCAAATGC ACCACAGTGG CAGAACTGGT GGTGTTTGTA
  AGGGAAGAAA TCCAGAGCGT GAGTCTCTTA TGGGTGTGTG CTCTATGCGG ACACTACCTA
  GGAATGCTAC TCCATCCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47790729	NES11980795	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33375169					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47790729	NES11980795	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116121865 () rs orientation: forward

Symbol	Name	Function Class
Rr688013	regulatory region 688013	1706 bp distal
Rr688014	regulatory region 688014	348 bp proximal
Rr688015	regulatory region 688015	1262 bp proximal