rs33375167 SNP Detail

Summary

• ID
  rs33375167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116121400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCACAA GTCTACCAAA
  CAGCCAGCAG CTGGGGAGCA AATGTTCAAA GAGATGAACG TATGCAGAAC AGCTCATATT
  TAAACCGTGT AGTTACAGTC CGCGCAAAGG ACTGTGTGGC CAGATAGCCT GGATTGCAGT
  TCTTTGACGG GTTCTCCCAT ATGGTGTCTC TGAGCTGCTC CCAGGTAGTT AACACTGACT
  R
  AACCTGCCAG AATATGGAAA CCTTCTCTCC ATGTCCCTCT GTGCCTGATA GATACTTCCT
  ATGACATAAG CTATCTTTTG TTTCAAAAAT CTCACACTTT GGAACTTCCT TTAGTAGAGC
  CCATGAGTGG TGTGTGTGTG TAAAGCCAAA GTGTCTTTGT CTTAGTGAGT TTCATTATGG
  CAGTTACCAC TAATGGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47790727	NES11980794	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33375167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47790727	NES11980794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116121400 () rs orientation: forward

Symbol	Name	Function Class
Rr688013	regulatory region 688013	1241 bp distal
Rr688014	regulatory region 688014	813 bp proximal
Rr688015	regulatory region 688015	1727 bp proximal