rs33372460 SNP Detail

Summary

• ID
  rs33372460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130910301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA ACAGACACTG GGGCTTGAGC
  R
  TTCAGGAGAT GTGCAGTTGT TCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45270280	mCV22650995	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147598344	ENSMUSSNP1011607	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33372460					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130910301 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	497 bp distal
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	839 bp downstream
Tssr20240	transcription start site region 20240	331 bp upstream
Tssr26336	transcription start site region 26336	1050 bp upstream
Tssr26337	transcription start site region 26337	217 bp upstream
Tssr26338	transcription start site region 26338	74 bp downstream
Tssr26339	transcription start site region 26339	148 bp downstream
Tssr26340	transcription start site region 26340	230 bp downstream
Tssr26341	transcription start site region 26341	495 bp downstream
Tssr26342	transcription start site region 26342	516 bp downstream
Tssr26343	transcription start site region 26343	570 bp downstream
Tssr26344	transcription start site region 26344	625 bp downstream