rs33371063 SNP Detail

Summary

• ID
  rs33371063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93290717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TTGAGCATCT CCCTCTGTTC
  R
  AAAGACCTTC TGGCCCACCT TTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45270626	mCV23858147	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss146943950	ENSMUSSNP204521	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320395969	CHEV_2_93300529	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33371063					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93290717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			1565 bp proximal
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			1176 bp downstream
Rr397140	regulatory region 397140			1466 bp upstream
Rr397141	regulatory region 397141			1963 bp upstream
Rr561206	regulatory region 561206			303 bp distal
Rr561207	regulatory region 561207			132 bp proximal
Tssr18996	transcription start site region 18996			489 bp downstream
Tssr18997	transcription start site region 18997			989 bp upstream
Tssr18998	transcription start site region 18998			1653 bp upstream
Tssr25291	transcription start site region 25291			1581 bp upstream
Tssr25292	transcription start site region 25292			1544 bp upstream
Tssr25293	transcription start site region 25293			1572 bp downstream
Tssr25294	transcription start site region 25294			1991 bp downstream