rs33369013 SNP Detail

Summary

• ID
  rs33369013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CGCCATGGTC TAACTGGACA
  Y
  GTCTGCTTTG TTGGGATAGG ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45271001	mCV22939311	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148391736	ENSMUSSNP6480148	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
ss320632130	CHEV_2_180177992	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33369013					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085080 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	426 bp upstream
Rr572757	regulatory region 572757	1831 bp proximal
Tssr22237	transcription start site region 22237	1010 bp downstream
Tssr22238	transcription start site region 22238	223 bp downstream
Tssr22239	transcription start site region 22239	754 bp upstream
Tssr28110	transcription start site region 28110	528 bp downstream
Tssr28111	transcription start site region 28111	599 bp downstream