rs33366596 SNP Detail

Summary

• ID
  rs33366596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:9563294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGTATC TAATGGCCAC
  AAACCCTCCT GAGCCCTCAG CTTATTTAAA TATATATAAT CCTCAGTTTG AGTGAATGTG
  GACTTGGCCT TCCCCAGTCA CGGGCCTGGG GAGTGGCAGA ATTTTTGCTG TGCTGTTTAT
  TGGAATCATC TCTCAAATGT ACAAAATATT TATAATTTAA AAATATACCC AATAAGAAAT
  W
  TCTAGGTTGC ATCCTTCACT TCTAAGTCCT AACTTCCCTC CCAAATTAGT GATAAATATT
  TAAAGGTTTT GTTACCCCAA TTGAAATAAA TTATCATGCC ACTTTTAGCA CCATATTAGA
  AATAGCTAAC TGTGTAGAGT CCTTGGAGTG AACAATGAAG GATCATGACA TAGGACAAAA
  TACCTAGCTT CAGGCCGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47789314	NES11648918	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33366596					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47789314	NES11648918	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9563294 () rs orientation: forward

Symbol	Name	Function Class
Rr626470	regulatory region 626470	424 bp proximal