rs33363265 SNP Detail

Summary

• ID
  rs33363265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100454378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTCTTT AGCCAAGAGA
  ATCACATCCA AAGGGAACTT GAAAATATAT TAATTATGGA AAATCAAGCT TATAAACTTG
  CCTCAGTTTT TTTATTTGAC TGTAAACAGC AAGCACAAAA AAATTCACAA TCAAACAAAC
  AAGTACCTTT GTATATACAT GAGAGACATG TGGGTGAGGA TGTTGGAAAC ATGGCTGGAG
  Y
  TGGCTGGTTT CTGTTCTGTG AACTGGCACT GACTGGCAAA CAGAGAAACT GGCCCCACCA
  CTGGCTTCCA CTCTCTGCTT TACTGTTCAT GAGGCATGAC CTGTGCCAAG ACACCAGCTC
  TCTGGTCCCT ATTTCTTGTC AATCAAATGA AATGAAGGAA ATACCAACTA CCCACTCGGC
  AAGAGTGCCA GCTATCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46804509	NES10732935	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	T	T	C		C	T	C	C		C
ss135540165	ENSMUSSNP5963857	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320849124	CHEV_3_100350985	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33363265					SNP	T	T	C	C	C	T	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804509	NES10732935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100454378 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	within coordinates
Rr581871	regulatory region 581871	750 bp proximal