rs33362240 SNP Detail

Summary

• ID
  rs33362240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152659201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGTTT CACATGCACC
  CTTCAGATCT GGCTGGCTGG TTCTTACCCA TCTAGCCTGT CCCAGCCACA TTCCTTTCAC
  CTATTTAATC TTTCACTGAG TTGGGTGTGG TGGTGCAAGC CCATAACCCC AGAAAAGTGT
  CACAGGAGGA CTGAGGTCAG GATCAGATGG GCTCTACAGA GACCCTGTTT CAAAACAAGG
  Y
  GAAATGGCTG AGACTACAGA CTGAGGAAGA AGACTTGCAC AGCAGGCTTA ATGCCCTGGG
  TTCAACCTCC AGCATACAGG GTAGGAAAAG AACAAAGACG CCTTCATGTT CCATATCTTC
  CGAACAGGTA ATAGCACTGA AAACTGTCTA CTATAGGTCA GGCAGAAAGC TGAATGGTCT
  ACACTCGACA CAGTCATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45269431	mCV27575753	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147974902	ENSMUSSNP494776	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33362240					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152659201 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			95 bp proximal
Rr367334	regulatory region 367334			814 bp downstream
Rr367335	regulatory region 367335			605 bp downstream
Rr567481	regulatory region 567481			1432 bp proximal