rs33358581 SNP Detail

Summary

• ID
  rs33358581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100455654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACACAC TCATTCACAT
  ACCAGAATTC TCTTTGCTCT GTTTTCCTGT AAAGTTGGGA GGTTTTCATG CTATTTTTAA
  TGATTTTAAT GGTCATATTC AAACTTTTCC AATGGGTATG GACAGCCTTA AAATTAATCC
  AGATTTTTTT TTCATTCCTC CTCTGGAAAT GCTTCACCAT GCTCATCTCT GAACTCATTG
  W
  ATAATTTAGA ATATTTTAGT TCTGACATTT TTATCTGCAA AAGAATGCTG GAGCTGCTGG
  TGTGGTTACC CTGGCTTGGC TGGCTGTTCC CCTAACACAC ACTCCATGGT CTTGTCACTG
  TTTTCTTTCT TGAATTTTAT CTTGTTTTGT TTTTCTGTAT TTTTTTTTAA CATTTAGTGT
  GTGTGTTTGA GAAAGAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46804572	NES10732847	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33358581					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804572	NES10732847	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100455654 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	153 bp distal
Rr581871	regulatory region 581871	505 bp distal