rs33355939 SNP Detail

Summary

• ID
  rs33355939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100455155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTCCTC TAACCACGGG
  TCCTTATCAC TGCCTCAGGC TTGTTCCAGC TCTTAGCAAG TCTAGATAGA TCACGCCCTG
  ATGACGTGTC CTAATTATTA TTATTACTCC TATTTGGAGC TTGGTGTTAG GGATGGAACT
  CCTAAGTAGA ATGCTAAGCA AGCACTCTAG CATTGAGCTC CACCCTCCGG TCAACTTCAG
  S
  GAGCTTAAGA ACCTAAAACC CTTCCACAGG GGCGGGGCTC TTACATTTCC CGTGTCATTA
  GCGTTTAGTT ATGCCTTGCA TAAATAGCAT ATCACCGTTT TATTTTGACC TGAAACTTTC
  TGTCTTTATT CATTTTATAA GAATTTATTT CCTTTACTTC ATTGGGAGTG GGTAGCAGAG
  CTTGGGAGGA GATGGCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46804539	NES10732868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33355939					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804539	NES10732868	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100455155 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	within coordinates
Rr581871	regulatory region 581871	6 bp distal