rs33354963 SNP Detail

Summary

• ID
  rs33354963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100455025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCCCAA GCCTTTGACC
  TTGGTTTAGG GTCAAGAATT TAACATTTCC TGCTTGAGAA CCTGAAGCCA AGGTGTCATT
  TTAACATTAA GAGCATAAAG AGTCCTTGTC TTTATCTAGG AAGGCAGAGG GTGTCTCCTC
  TAACCACGGG TCCTTATCAC TGCCTCAGGC TTGTTCCAGC TCTTAGCAAG TCTAGATAGA
  Y
  CACGCCCTGA TGACGTGTCC TAATTATTAT TATTACTCCT ATTTGGAGCT TGGTGTTAGG
  GATGGAACTC CTAAGTAGAA TGCTAAGCAA GCACTCTAGC ATTGAGCTCC ACCCTCCGGT
  CAACTTCAGC GAGCTTAAGA ACCTAAAACC CTTCCACAGG GGCGGGGCTC TTACATTTCC
  CGTGTCATTA GCGTTTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46804533	NES10732948	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33354963					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804533	NES10732948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100455025 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	within coordinates
Rr581871	regulatory region 581871	103 bp proximal