rs33350506 SNP Detail

Summary

• ID
  rs33350506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGAGCGC CCCCTAAGTT CCGCTCTGCG AGGTGGCCGC
  CACGGGCGGA CGGGGAGGGG CGGGTACATT CTGAGTGGAG GATGGGCGAG CATGCAGCTG
  Y
  CCGCAGGCCA AGACACTAGG GTAAACACGC CGGGGTGGGC GGCGCACGCA AACTGCAGGA
  CAGCCGGCGG GGCCACCCTC CCCACTACCT GTCGCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45267539	mCV22674672	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33350506					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967710 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	248 bp upstream
Cpgi12234	CpG island 12234	1834 bp distal
Cpgi12235	CpG island 12235	within coordinates
Gm74510	predicted gene, 74510	427 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr397296	regulatory region 397296	1543 bp upstream
Rr564648	regulatory region 564648	1243 bp distal
Rr564651	regulatory region 564651	within coordinates
Rr564652	regulatory region 564652	363 bp proximal
Rr564653	regulatory region 564653	438 bp proximal
Tssr20042	transcription start site region 20042	240 bp upstream
Tssr20043	transcription start site region 20043	1768 bp upstream
Tssr20044	transcription start site region 20044	1797 bp upstream
Tssr26150	transcription start site region 26150	1610 bp downstream