rs33349685 SNP Detail

Summary

• ID
  rs33349685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9149209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTCTTT TCCTTTAAGT
  GACATGTTAG AGGCACTAAT AGAGCAGGCT TCCTTAGCAC ATGTGTCCAG TTCTTGGTGC
  TAATATATAT AAGACTGTGA CTTTAGGTAA TATGAAATCC AAGTATTTTT TTTATCTAAC
  TGGGAAACTC TCATGCTGCA TATGGCCCTC TGTAATGTAG TTCCTGGGTA GTTCCCTCTA
  Y
  TATTCCTACC GGCACGCTCT GTTTAGATTT TACGTTTTAA TAATAGTAAG CAAGAAATTA
  TGTAGAGGTA ATATTTTCTT CATTATCTTG TCCAAACCTT ATTTACACTT TCTTATTCTC
  AAGACGCTTC CCCCCACCAT ACCCTACTAA ACTTCTATGT ATACTTAATA CAACCAGGTC
  AAAATTATCT TTCCTGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787360	NES11665883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349685					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787360	NES11665883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9149209 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626466	regulatory region 626466	653 bp proximal