rs33348560 SNP Detail

Summary

• ID
  rs33348560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9148735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACATATG AGCGTTTTGC
  CTGTGTATGT GTGTGTGAAC CATGTGTTTT ACTGGTACCT ACAGAGGCCA GAAGAGAGCA
  TTAGGTCGAC TGAAACTGGA GTAGCAGATG GTAGTTGACC TCTGTGTGGG TGCTGGGGAT
  CAAGCCTGTG TCCTCTATAA AAGTAGCAAG AACTCTAAAC TGCTGAGCCT TCTCTTCAGT
  Y
  CAGATACCAA TTTTTGTAAC ATTTGTCTTT TAATTTTTTT ATACTAAATA AAATCATCTA
  ATTGGAATAA AAGCCACAAA AATATAAAAT AAAAAGACAA GTGAATATTA ATTTTGGCAC
  TTTTACTAGC ATATAATCAT TGTTAACAGT TTACCCAACC CCTATCCTGT TTTTGTCACC
  TCATGATACT ACCCTTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787354	NES11665876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33348560					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787354	NES11665876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9148735 () rs orientation: forward

Symbol	Name	Function Class
Gm35736	predicted gene, 35736	1657 bp downstream
Nxph1	neurexophilin 1	Intron
Rr626466	regulatory region 626466	1127 bp proximal