rs33348557 SNP Detail

Summary

• ID
  rs33348557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9148467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTCTTT GAATCCCAGC
  TAGAGAACAT CTTTCTTCTT GAACATGGAG ACTTTACTAG CAAATAGAGG TTATACTAAC
  TCTGAGGAGG AAAGCCAGTA CTACGAAGAG GGTCAGGGAA GTCCTGGCAT CTACGCTGGA
  TTTCTTGAGA TTTGATGACA TGTGGCTGAT GCACAGCAGG GCCTGTGTAT CTTCAGGGAT
  K
  TGTCTCCACT GTGGGCAATA ACTTTATTCA AATTATGGAC TTTTAAAGCC TGTATTTATT
  TTTCTCTTAT ACATATGAGC GTTTTGCCTG TGTATGTGTG TGTGAACCAT GTGTTTTACT
  GGTACCTACA GAGGCCAGAA GAGAGCATTA GGTCGACTGA AACTGGAGTA GCAGATGGTA
  GTTGACCTCT GTGTGGGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787350	NES11665930	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33348557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787350	NES11665930	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9148467 () rs orientation: forward

Symbol	Name	Function Class
Gm35736	predicted gene, 35736	1389 bp downstream
Nxph1	neurexophilin 1	Intron
Rr626466	regulatory region 626466	1395 bp proximal